Publications
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Title Thermal atomic layer deposition of AlOxNy thin films for surface passivation of nano-textured flexible silicon 
TUTKA
Author(s) Parashar, Piyush K. & Kinnunen, Sami & Sajavaara, Timo & Toppari, Jussi & Komarala, Vamsi K. Collective Work Solar Energy Materials and Solar Cells Year 2019 -
Title Coherent Light Harvesting through Strong Coupling to Confined Light
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Open Access
Author(s) Groenhof, Gerrit & Toppari, Jussi Collective Work Journal of Physical Chemistry Letters Year 2018 -
Title Aluminum Plasmonics : Fabrication and Characterization of Broadly Tunable Plasmonic Surfaces for Plasmon Molecule Strong-Coupling and Fluorescence Enhancement
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Author(s) Pikker, Siim & Shen, Boxuan & Tapio, Kosti & Groenhof, Gerrit & Toppari, Jussi Editors Bartolo, Baldassare Di & Silvestri, Luciano & Cesaria, Maura & Collins, John Collective Work Quantum Nano-Photonics : Proceedings of the NATO Advanced Study Institute on Quantum Nano-Photonics Year 2018 -
Title Surface characteristics control the attachment and functionality of (chimeric) avidin
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Open Access
Author(s) Shao, Dongkai & Tapio, Kosti & Auer, Sanna & Toppari, Jussi & Hytönen, Vesa & Ahlskog, Markus Collective Work Langmuir Year 2018 -
Title Plasmonic nanostructures through DNA-assisted lithography
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Open Access
Author(s) Shen, Boxuan & Linko, Veikko & Tapio, Kosti & Pikker, Siim & Lemma, Tibebe & Gopinath, Ashwin & Gothelf, Kurt V. & Kostiainen, Mauri A. & Toppari, Jussi Collective Work Science Advances Year 2018 -
Title DNA-Assisted Molecular Lithography
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Author(s) Shen, Boxuan & Linko, Veikko & Toppari, Jussi Editors Zuccheri, Giampaolo Collective Work DNA Nanotechnology : Methods and Protocols Year 2018 -
Title A DNA-nanoparticle actuator enabling optical monitoring of nanoscale movements induced by an electric field
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Author(s) Tapio, Kosti & Shao, Dongkai & Auer, Sanna & Tuppurainen, Jussipekka & Ahlskog, Markus & Hytönen, Vesa P. & Toppari, Jussi Collective Work Nanoscale Year 2018 -
Title Dynamics of Strongly Coupled Modes between Surface Plasmon Polaritons and Photoactive Molecules: The Effect of the Stokes Shift
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Author(s) Baieva, Svitlana & Hakamaa, Ossi & Groenhof, Gerrit & Heikkilä, Tero & Toppari, Jussi Collective Work ACS Photonics Year 2017 -
Title Measurement of changes in impedance of DNA nanowires due to radiation induced structural damage : A novel approach for a DNA-based radiosensitive device
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Author(s) Heimbach, Florian & Arndt, Alexander & Nettelbeck, Heidi & Langner, Frank & Giesen, Ulrich & Rabus, Hans & Sellner, Stefan & Toppari, Jussi & Shen, Boxuan & Baek, Woon Yong Collective Work The European Physical Journal D Year 2017 -
Title Multiscale Molecular Dynamics Simulations of Polaritonic Chemistry
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Open Access
Author(s) Luk, Hoi Ling & Feist, Johannes & Toppari, Jussi & Groenhof, Gerrit Collective Work Journal of Chemical Theory and Computation Year 2017 -
Title Synergistic enhancement via plasmonic nanoplate-bacteria-nanorod supercrystals for highly efficient SERS sensing of food-borne bacteria
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Open Access
Author(s) Wang, WeiQiang & Hynninen, Ville & Qiuc, Li & Zhang, AiWen & Lemma, Tibebe & Zhang, NanNan & Ge, HongHua & Toppari, Jussi & Hytönen, Vesa P. & Wang, Jin Collective Work Sensors and Actuators B: Chemical Year 2017 -
Title Improved antifouling properties and selective biofunctionalization of stainless steel by employing heterobifunctional silane-polyethylene glycol overlayers and avidin-biotin technology
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Open Access
Author(s) Hynninen, Ville & Vuori, Leena & Hannula, Markku & Tapio, Kosti & Lahtonen, Kimmo & Isoniemi, Tommi & Lehtonen, Elina & Hirsimäki, Mika & Toppari, Jussi & Valden, Mika & Hytönen, Vesa P. Collective Work Scientific Reports Year 2016 -
Title SERS detection of cell surface and intracellular components of microorganisms using nano-aggregated Ag substrate
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Author(s) Lemma, Tibebe & Saliniemi, Alex & Hynninen, Ville & Hytönen, Vesa P. & Toppari, Jussi Collective Work Vibrational Spectroscopy Year 2016 -
Title DNA-Based Enzyme Reactors and Systems
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Open Access
Author(s) Linko, Veikko & Nummelin, Sami & Aarnos, Laura & Tapio, Kosti & Toppari, Jussi & Kostiainen, Mauri A. Collective Work Nanomaterials Year 2016 -
Title Core–Shell Nanorod Columnar Array Combined with Gold Nanoplate–Nanosphere Assemblies Enable Powerful In Situ SERS Detection of Bacteria
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Author(s) Qiu, Li & Wang, Weiqiang & Zhang, Aiwen & Zhang, Nannan & Lemma, Tibebe & Ge, Honghua & Toppari, Jussi & Hytönen, Vesa P. & Wang, Jin Collective Work ACS Applied Materials and Interfaces Year 2016 -
Title Metallic Nanostructures Based on DNA Nanoshapes
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Open Access
Author(s) Shen, Boxuan & Tapio, Kosti & Linko, Veikko & Kostiainen, Mauri A. & Toppari, Jussi Collective Work Nanomaterials Year 2016 -
Title Toward Single Electron Nanoelectronics Using Self-Assembled DNA Structure
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Author(s) Tapio, Kosti & Leppiniemi, Jenni & Shen, Boxuan & Hytönen, Vesa P. & Fritzsche, Wolfgang & Toppari, Jussi Collective Work Nano Letters Year 2016 -
Title Influence of Nitrogen Doping on Device Operation for TiO2-Based Solid-State Dye-Sensitized Solar Cells: Photo-Physics from Materials to Devices
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Open Access
Author(s) Wang, Jin & Tapio, Kosti & Habert, Aurélie & Sorgues, Sebastien & Colbeau-Justin, Christophe & Ratier, Bernard & Scarisoreanu, Monica & Toppari, Jussi & Herlin-Boime, Nathalie & Bouclé, Johann Collective Work Nanomaterials Year 2016 -
Title Measuring optical anisotropy in poly(3,4-ethylene dioxythiophene):poly(styrene sulfonate) films with added graphene
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Open Access
Author(s) Isoniemi, Tommi & Tuukkanen, Sampo & Cameron, David C. & Simonen, Janne & Toppari, Jussi Collective Work Organic electronics Year 2015 -
Title One-step large-scale deposition of salt-free DNA origami nanostructures
TUTKA
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Open Access
Author(s) Linko, Veikko & Shen, Boxuan & Tapio, Kosti & Toppari, Jussi & Kostiainen, Mauri A. & Tuukkanen, Sampo Collective Work Scientific Reports Year 2015 -
Title Dielectrophoretic trapping of multilayer DNA origami nanostructures and DNA origami-induced local destruction of silicon dioxide
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Author(s) Shen, Boxuan & Linko, Veikko & Dietz, Hendrik & Toppari, Jussi Collective Work Electrophoresis Year 2015 -
Title Custom-shaped metal nanostructures based on DNA origami silhouettes
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Author(s) Shen, Boxuan & Linko, Veikko & Tapio, Kosti & Kostiainen, Mauri A. & Toppari, Jussi Collective Work Nanoscale Year 2015 -
Title About the dynamics of strongly coupled surface plasmon polaritons and Sulforhodamine 101
TUTKA
Author(s) Baieva, Svitlana & Hohenester, Ulrich & Koponen, Mikko & Hakamaa, Ossi & Toppari, Jussi Editors Andrews, David L. & Nunzi, Jean-Michel & Ostendorf, Andreas Collective Work Proceedings of SPIE Volume 9126 : Nanophotonics V Year 2014 -
Title Pienestä syntyi suurta = Nano came to Jyväskylä
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Open Access
Author(s) Heikkilä, Mari & Häkkinen, Hannu & Rissanen, Kari & Toppari, Jussi Editors Heikkilä, Mari & Isotalo, Tero Year 2014 -
Title Strong coupling between surface plasmon polaritons and \beta-carotene in nanolayered system
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Open Access
Author(s) Baieva, Svitlana & Ihalainen, Janne & Toppari, Jussi Collective Work Journal of Chemical Physics Year 2013 -
Title Collective optical resonances in networks of metallic carbon nanotubes
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Open Access
Author(s) Isoniemi, Tommi & Johansson, Andreas & Toppari, Jussi & Kunttu, Henrik Collective Work Carbon Year 2013 -
Title Absence of mutual polariton scatterings for strongly coupled surface plasmon polaritons and dye molecules with large Stokes shift
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Open Access
Author(s) Koponen, Mikko & Hohenester, U. & Hakala, Tommi & Toppari, Jussi Collective Work Physical Review B Year 2013 -
Title Self-Assembled DNA-Based Structures for Nanoelectronics
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Author(s) Linko, Veikko & Toppari, Jussi Collective Work Journal of Self-Assembly and Molecular Electronics Year 2013 -
Title Conductive Behavior of G4-DNA-Silver Nanoparticle Structures
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Author(s) Parviainen, Teemu & Eidelshtein, G. & Kotlyar, A. & Toppari, Jussi Editors Spindler, Lea & Fritzsche, Wolfgang Collective Work Guanine Quartets: Structure and Application Year 2013 -
Title Plasmonic Coupling and Long-Range Transfer of an Excitation along a DNA Nanowire
TUTKA
Author(s) Toppari, Jussi & Wirth, J. & Garwe, F. & Stranik, O. & Csaki, A. & Bergmann, J. & Paa, W. & Fritzsche, W. Collective Work ACS Nano Year 2013 -
Title Strong coupling between surface plasmon polaritons and Sulforhodamine 101 dye
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Open Access
Author(s) Baieva, Svitlana & Hakala, Tommi & Toppari, Jussi Collective Work Nanoscale Research Letters Year 2012 -
Title Direct optical measurement of light coupling into planar waveguide by plasmonic nanoparticles
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Open Access
Author(s) Pennanen, Antti & Toppari, Jussi Collective Work Optics Express Year 2012 -
Title ALD Grown Aluminum Oxide Submonolayers in Dye-Sensitized Solar Cells: The Effect on Interfacial Electron Transfer and Performance
TUTKA
Author(s) Antila, Liisa & Heikkilä, Mikko J. & Mäkinen, Ville & Humalamäki, Niko & Laitinen, Mikko & Linko, Veikko & Jalkanen, Pasi & Toppari, Jussi & Aumanen, Viivi & Kemell, Marianna & Myllyperkiö, Pasi & Honkala, Karoliina & Häkkinen, Hannu & Leskelä, Markku & Korppi-Tommola, Jouko Collective Work The Journal of Physical Chemistry C Year 2011 -
Title Surface plasmon effects on carbon nanotube field effect transistors
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Open Access
Author(s) Isoniemi, Tommi & Johansson, Andreas & Hakala, Tommi & Rinkiö, Marcus & Törmä, Päivi & Toppari, Jussi & Kunttu, Henrik Collective Work Applied Physics Letters Year 2011 -
Title Trapping and Immobilization of DNA Molecules Between Nanoelectrodes
TUTKA
Author(s) Kuzyk, Anton & Toppari, Jussi & Törmä, Päivi Editors Zuccheri, Giampaolo & Samorì, Bruno Year 2011 -
Title Defined-sized DNA triple crossover construct for molecular electronics: modification, positioning and conductance properties
TUTKA
Author(s) Linko, Veikko & Leppiniemi, J. & Paasonen, Susanna & Hytönen, Vesa & Toppari, Jussi Collective Work Nanotechnology Year 2011 -
Title Growth of immobilized DNA by polymerase: bridging nanoelectrodes with individual dsDNA molecules
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Open Access
Author(s) Linko, Veikko & Leppiniemi, J. & Shen, Boxuan & Niskanen, Einari & Hytönen, Vesa & Toppari, Jussi Collective Work Nanoscale Year 2011 -
Title Vacuum Rabi splitting for surface plasmon polaritons and Rhodamine 6G molecules
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Author(s) Moerl, R.J. & Hakala, Tommi & Väkeväinen, A.I. & Eskelinen, A.-P. & Sharma, G. & Toppari, Jussi & Kuzyk, Anton & Pettersson, Mika & Kunttu, Henrik & Törmä, Päivi Editors Kuzmiak, V. & Markos, P. & Szoplik, T. Collective Work Metamaterials VI: Proceedings of SPIE Year 2011 -
Title Field-Induced Nanolithography for High-Throughput Pattern Transfer
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Author(s) Hakala, Tommi & Linko, Veikko & Eskelinen, A.-P. & Toppari, Jussi & Kuzyk, Anton & Törmä, Päivi Collective Work Small Year 2009 -
Title Vacuum Rabi splitting and strong coupling dynamics for surface plasmon polaritons and Rhodamine 6G molecules
TUTKA
Author(s) Hakala, Tommi & Toppari, Jussi & Kuzyk, Anton & Pettersson, Mika & Tikkanen, H.-M. & Kunttu, Henrik & Törmä, Päivi Collective Work Phys. Rev. Lett. Year 2009 -
Title Vacuum Rabi splitting and strong-coupling dynamics for surface-plasmon polaritons and rhodamine 6G molecules
TUTKA
Author(s) Hakala, Tommi & Toppari, Jussi & Kuzyk, Anton & Pettersson, Mika & Tikkanen, Hanna & Kunttu, Henrik & Törmä, Päivi Collective Work Physical Review Letters Year 2009 -
Title Characterization of the Conductance Mechanisms of DNA Origami by AC Impedance Spectroscopy
TUTKA
Author(s) Linko, Veikko & Paasonen, Susanna & Kuzyk, Anton & Törmä, Päivi & Toppari, Jussi Collective Work Small Year 2009 -
Title Method for finding the critical temperature of the island in a SET structure
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Author(s) Toppari, Jussi & Kühn, Thomas & Halvari, Ari & Paraoanu, G.S. Collective Work Journal of Physics: Conference Series Year 2009 -
Title Frequency conversion of propagating surface plasmon polaritons by organic molecules
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Author(s) Hakala, Tommi & Toppari, Jussi & Pettersson, Mika & Kuzyk, Anton & Tikkanen, Hanna & Kunttu, Henrik & Törmä, Päivi Collective Work Applied Physics Letters Year 2008 -
Title High-yield of memory elements from carbon nanotube field-efect transistors with atomic layer deposited gate dielectric
TUTKA
Author(s) Rinkiö, Marcus & Johansson, Andreas & Zavodchikova, Marina & Toppari, Jussi & Nasibulin, A. G & Kauppinen, E.I. & Törmä, Päivi Collective Work New J. Phys. Year 2008 -
Title Dielectrophoretic Trapping of DNA Origami
TUTKA
Author(s) Yurke, B. & Toppari, Jussi & Linko, Veikko & Törmä, Päivi Collective Work Small Year 2008 -
Title A hybrid method for calorimetry with subnanolitre samples using Schottky junctions
TUTKA
Author(s) Hakala, Tommi & Toppari, Jussi & Törmä, Päivi Collective Work J. Appl. Phys. Year 2007 -
Title Molecular coupling of light with plamonic waveguides
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Author(s) Kuzyk, Anton & Pettersson, Mika & Toppari, Jussi & Hakala, Tommi & Tikkanen, Hanna & Kunttu, Henrik & Törmä, Päivi Collective Work Optics Extress Year 2007 -
Title Cooper-pair resonances and subgap Coulomb blockade in a superconducting single-electron transistor
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Author(s) Toppari, Jussi & Kühn, Thomas & Halvari, Ari & Kinnunen, Jami & Leskinen, Mikko & Paraoanu, G.S. Collective Work Phys. Rev. B Year 2007 -
Title Trapping of 27 bp–8 kbp DNA and immobilization of thiol-modified DNA using dielectrophoresis
TUTKA
Author(s) Tuukkanen, Sampo & Kuzyk, Anton & Toppari, Jussi & Häkkinen, Hannu & Hytönen, Vesa & Niskanen, Einari & Rinkiö, Marcus & Törmä, Päivi Collective Work Nanotechnology Year 2007 -
Title Fabrication of carbon nanotube-based field-effect transistors for studies of their memory effects
TUTKA
Author(s) Zavodchikova, Marina & Johansson, Andreas & Rinkiö, Marcus & Toppari, Jussi & Nasibulin, A.G. & Kauppinen, E.I. & Törmä, Päivi Collective Work Physica Status Solidi (b) Year 2007 -
Title Kohti molekyylielektroniikkaa
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Author(s) Ahlskog, Markus & Toppari, Jussi Collective Work Prosessori Year 2006 -
Title Carbon nanotubes as electrodes for dielectrophoresis of DNA
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Author(s) Tuukkanen, Sampo & Kuzyk, Anton & Toppari, Jussi & Hirviniemi, Lasse & Hytönen, Vesa & Ihalainen, Teemu & Törmä, Päivi Collective Work Nano Letters Year 2006 -
Title Dna-kone kokoaa itse itsensä
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Author(s) Tuukkanen, Sampo & Toppari, Jussi & Törmä, Päivi Collective Work Tiede Year 2006 -
Title Dielectrophoresis of nanoscale dsDNA and humidity effects on its electrical conductivity
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Author(s) Tuukkanen, Sampo & Kuzyk, Anton & Toppari, Jussi & Hytönen, Vesa & Ihalainen, Teemu & Törmä, Päivi Collective Work Appl. Phys. Lett. Year 2005 -
Title Dielectrophoresis as a tool for nanoscale DNA manipulation
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Author(s) Tuukkanen, Sampo & Toppari, Jussi & Hytönen, Vesa & Kuzyk, Anton & Kulomaa, Markku & Törmä, Päivi Collective Work Int. J. of Nanotechnology Year 2005 -
Title Connecting Berry's phase and the pumped charge in a Cooper pair pump
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Author(s) Aunola, Matias & Toppari, Jussi Collective Work Phys. Rev. B Year 2003 -
Title Transport phenomena and decoherence in short Josephson juntion arrays
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Author(s) Toppari, Jussi Year 2003 -
Title Fabrication of mesoscopic superconducting Nb wires using conventional electron-beam lithographic techniques
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Author(s) Kim, Nam & Toppari, Jussi & Hansen, Klavs & Pekola, Jukka & Suppula, Tarmo Collective Work J. Vac. Sci. Technol. Year 2002 -
Title Decoherence in circuits of small Josephson junctions
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Author(s) Pekola, Jukka & Toppari, Jussi Collective Work Phys. Rev. Year 2001 -
Title Characterization of Cooper pair boxes for quantum computing
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Author(s) Toppari, Jussi & Kim, Nam & Hansen, Klavs & Taskinen, Lasse & Savolainen, Marko & Pekola, Jukka Collective Work Physica Year 2001 -
Title Arrays of Josephson junctions in an environment with vanishing impedance
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Author(s) Aunola, Matias & Pekola, Jukka & Toppari, Jussi Year 2000 -
Title Characterization of Cooper pair boxes for quantum computing.
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Author(s) Toppari, Jussi & Kim, Nam & Taskinen, Lasse & Savolainen, Marko & Pekola, Jukka & Hansen, K. Year 2000