Computational Biomolecular Chemistry Group

Table of contents

Research group type
Research group
Core fields of research
Basic natural phenomena and mathematical thinking
Research areas
Computational Science
Nanoscience Center
Department of Chemistry - Research areas
Chemical Nanoscience
Faculty
Faculty of Mathematics and Science
Department
Department of Chemistry

Research group description

Our aim is to understand and ultimately tailor the chemical properties of biomolecular systems. To achieve our goals we develop new strategies to combine advanced molecular dynamics techniques with high-level quantum chemistry approaches. Our developments are made available to other researchers in the molecular dynamics program package Gromacs.

Interaction between biology, physics, and chemistry is presently providing a window into the exciting new era of biotechnology. Enzymes, in particular, that can catalyze chemical reactions with a high efficiency and under very mild conditions, provide valuable templates for artificial devices that we will need to meet the challenges of the 21st century. Mimicking biochemical processes however, requires complete understanding of the underlying molecular dynamics. As the relevant time and spatial resolution are notoriously hard to access experimentally, computer simulations are the methods of choice to deepen our understanding of how proteins have evolved to mediate chemical reactions and to use these insight to create devices that mimic biological function.

Publications

Publication
2023
Available through Open Access
Nature Chemistry.
Hutchison, Christopher D. M.
Baxter, James M.
Fitzpatrick, Ann
Dorlhiac, Gabriel
Fadini, Alisia
Perrett, Samuel
Maghlaoui, Karim
Lefèvre, Salomé Bodet
Cordon-Preciado, Violeta
Ferreira, Josie L.
Chukhutsina, Volha U.
Garratt, Douglas
Barnard, Jonathan
Galinis, Gediminas
Glencross, Flo
Morgan, Rhodri M.
Stockton, Sian
Taylor, Ben
Yuan, Letong
Romei, Matthew G.
Lin, Chi-Yun
Marangos, Jon P.
Schmidt, Marius
Chatrchyan, Viktoria
Buckup, Tiago
Morozov, Dmitry
Park, Jaehyun
Park, Sehan
Eom, Intae
Kim, Minseok
Jang, Dogeun
Choi, Hyeongi
Hyun, HyoJung
Park, Gisu
Nango, Eriko
Tanaka, Rie
Owada, Shigeki
Tono, Kensuke
DePonte, Daniel P.
Carbajo, Sergio
Seaberg, Matt
Aquila, Andrew
Boutet, Sebastien
Barty, Anton
Iwata, So
Boxer, Steven G.
Groenhof, Gerrit
van Thor, Jasper J.
Publication
2023
Available through Open Access
Journal of the American Chemical Society.
Fadini, Alisia
Hutchison, Christopher D. M.
Morozov, Dmitry
Chang, Jeffrey
Maghlaoui, Karim
Perrett, Samuel
Luo, Fangjia
Kho, Jeslyn C. X.
Romei, Matthew G.
Morgan, R. Marc L.
Orr, Christian M.
Cordon-Preciado, Violeta
Fujiwara, Takaaki
Nuemket, Nipawan
Tosha, Takehiko
Tanaka, Rie
Owada, Shigeki
Tono, Kensuke
Iwata, So
Boxer, Steven G.
Groenhof, Gerrit
Nango, Eriko
van Thor, Jasper J.
Publication
2022
Available through Open Access
Chemistry : A European Journal.
Mironov, Vladimir
Shchugoreva, Irina A.
Artyushenko, Polina V.
Morozov, Dmitry
Borbone, Nicola
Oliviero, Giorgia
Zamay, Tatiana N.
Moryachkov, Roman V.
Kolovskaya, Olga S.
Lukyanenko, Kirill A.
Song, Yangling
Merkuleva, Iuliia A.
Zabluda, Vladimir N.
Peters, Georgy
Koroleva, Lyudmila S.
Veprintsev, Dmitry V.
Glazyrin, Yury E.
Volosnikova, Ekaterina A.
Belenkaya, Svetlana V.
Esina, Tatiana I.
Isaeva, Anastasiya A.
Nesmeyanova, Valentina S.
Shanshin, Daniil V.
Berlina, Anna N.
Komova, Nadezhda S.
Svetlichnyi, Valery A.
Silnikov, Vladimir N.
Shcherbakov, Dmitriy N.
Zamay, Galina S.
Zamay, Sergey S.
Smolyarova, Tatyana
Tikhonova, Elena P.
Chen, Kelvin H.-C.
Jeng, U-Ser
Condorelli, Gerolama
de Franciscis, Vittorio
Groenhof, Gerrit
Yang, Chaoyong
Moskovsky, Alexander A.
Fedorov, Dmitri G.
Tomilin, Felix N.
Tan, Weihong
Alexeev, Yuri
Berezovski, Maxim V.
Kichkailo, Anna S.

Research group