Computational Biomolecular Chemistry Group

Table of contents

Research group type
Research group
Core fields of research
Basic natural phenomena and mathematical thinking
Research areas
Computational Science
Nanoscience Center
Department of Chemistry - Research areas
Chemical Nanoscience
Faculty
Faculty of Mathematics and Science
Department
Department of Chemistry

Research group description

Our aim is to understand and ultimately tailor the chemical properties of biomolecular systems. To achieve our goals we develop new strategies to combine advanced molecular dynamics techniques with high-level quantum chemistry approaches. Our developments are made available to other researchers in the molecular dynamics program package Gromacs.

Interaction between biology, physics, and chemistry is presently providing a window into the exciting new era of biotechnology. Enzymes, in particular, that can catalyze chemical reactions with a high efficiency and under very mild conditions, provide valuable templates for artificial devices that we will need to meet the challenges of the 21st century. Mimicking biochemical processes however, requires complete understanding of the underlying molecular dynamics. As the relevant time and spatial resolution are notoriously hard to access experimentally, computer simulations are the methods of choice to deepen our understanding of how proteins have evolved to mediate chemical reactions and to use these insight to create devices that mimic biological function.

Publications

Publication
2021
Available through Open Access
Nature.
Dods, Robert
Båth, Petra
Morozov, Dmitry
Gagnér, Viktor Ahlberg
Arnlund, David
Luk, Hoi Ling
Kübel, Joachim
Maj, Michał
Vallejos, Adams
Wickstrand, Cecilia
Bosman, Robert
Beyerlein, Kenneth R.
Nelson, Garrett
Liang, Mengning
Milathianaki, Despina
Robinson, Joseph
Harimoorthy, Rajiv
Berntsen, Peter
Malmerberg, Erik
Johansson, Linda
Andersson, Rebecka
Carbajo, Sergio
Claesson, Elin
Conrad, Chelsie E.
Dahl, Peter
Hammarin, Greger
Hunter, Mark S.
Li, Chufeng
Lisova, Stella
Royant, Antoine
Safari, Cecilia
Sharma, Amit
Williams, Garth J.
Yefanov, Oleksandr
Westenhoff, Sebastian
Davidsson, Jan
DePonte, Daniel P.
Boutet, Sébastien
Barty, Anton
Katona, Gergely
Groenhof, Gerrit
Brändén, Gisela
Neutze, Richard
Publication
2020
Available through Open Access
Software for Exascale Computing - SPPEXA 2016-2019. Lecture Notes in Computational Science and Engineering. Springer International Publishing.
Kohnke, Bartosz
Ullmann, Thomas R.
Beckmann, Andreas
Kabadshow, Ivo
Haensel, David
Morgenstern, Laura
Dobrev, Plamen
Groenhof, Gerrit
Kutzner, Carsten
Hess, Berk
Dachsel, Holger
Grubmüller, Helmut
Publication
2020
Available through Open Access
eLife.
Claesson, Elin
Wahlgren, Weixiao Yuan
Takala, Heikki
Pandey, Suraj
Castillon, Leticia
Kuznetsova, Valentyna
Henry, Léocadie
Panman, Matthijs
Carrillo, Melissa
Kübel, Joachim
Nanekar, Rahul
Isaksson, Linnéa
Nimmrich, Amke
Cellini, Andrea
Morozov, Dmitry
Maj, Michał
Kurttila, Moona
Bosman, Robert
Nango, Eriko
Tanaka, Rie
Tanaka, Tomoyuki
Fangjia, Luo
Iwata, So
Owada, Shigeki
Moffat, Keith
Groenhof, Gerrit
Stojkovic, Emina A.
Ihalainen, Janne A.
Schmidt, Marius
Westenhof, Sebastian

Research group